Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs1057522 chr4:140357563 T/C 9.75E-6 492 20 26.83 18.2 KM Plot
HNSC rs10590785 chr2:99896239 GTT/G 1.37E-10 513 6.83 20.78 22.27 KM Plot
HNSC rs1059524 chr2:132181483 A/C 1.11E-5 515 14.13 21.37 23.37 KM Plot
HNSC rs10655802 chr1:26569285 T/TTTTG 1.38E-5 510 6.8 21.37 22.23 KM Plot
HNSC rs10656527 chr17:64282639 C/CTAT 4.75E-5 509 21.42 23.1 17.3 KM Plot
HNSC rs10751734 chr1:26574258 A/G 1.75E-5 515 6.8 20.58 22.1 KM Plot
HNSC rs10804790 chr3:161039300 T/A 3.39E-5 507 24.68 24.12 17.53 KM Plot
HNSC rs1088475 chr15:31140700 C/T 1.04E-5 511 22.83 20.02 12.07 KM Plot
HNSC rs10884917 chr10:111684525 C/G 4.07E-5 502 15.72 22.33 27.23 KM Plot
HNSC rs10902724 chr1:26576032 A/G 1.72E-5 515 6.8 19.53 22.23 KM Plot
HNSC rs10927873 chr1:16251900 A/G 3.33E-5 515 5.42 18.67 22.22 KM Plot
HNSC rs11067532 chr12:110058997 G/A 4.94E-9 503 21.53 19.23 2.73 KM Plot
HNSC rs11070908 chr15:52926838 G/A 1.84E-5 510 15.03 23.13 23.57 KM Plot
HNSC rs11123769 chr2:99822717 A/G 4.15E-8 514 6.83 19.27 22.27 KM Plot
HNSC rs11123776 chr2:99884477 C/T 9.26E-7 513 7 20.48 22.2 KM Plot